PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16880A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 223aa    MW: 24207.3 Da    PI: 10.4391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16880AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.1e-131001445299
                                .EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3  52 yrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                y+++s++yv+tkGW+++v++++L +gD+v+F    r++++l++  +r+
  Oropetium_20150105_16880A 100 YWGSSQSYVMTKGWSRYVRDKRLAAGDTVTFC---RDGARLYIDCRRR 144
                                5*******************************...4667788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-53662IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.81E-1440136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1199144IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-10100144IPR003340B3 DNA binding domain
CDDcd100177.57E-8100135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MALTIALAAD SSIAGSGGGG GGLLAAARVA DEGGKQVHRR ERLFEKVVTP SDVGKLNRLV  60
VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY WGSSQSYVMT KGWSRYVRDK  120
RLAAGDTVTF CRDGARLYID CRRRGKPAAV AAPVRVPAQA AACSLLFGDG GNKVQQRLAP  180
PAAVVDDEEL ARQRGRRLVR LFGVDLELRA AATEPMLLDL QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-184114411117DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16880A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ5VS554e-31Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-24B3 family protein