PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17058A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 252aa    MW: 26871.4 Da    PI: 7.0651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17058AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.3e-057093326
                               HHHHHHHHHHHHHHHHHHHHHHCT CS
                        HLH  3 rahnerErrRRdriNsafeeLrel 26
                               r+h e+E+rRR+ri+s +++Lr +
  Oropetium_20150105_17058A 70 RNHREAEKRRRERIKSHLDRLRNI 93
                               78********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.3E-470115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-970129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MFPAEVSPLA GGAGAAARQG DVPLLPPFFM AASIWPTTGG SSSASEAEDE XXXXXXXXXX  60
XHDRALAASR NHREAEKRRR ERIKSHLDRL RNIDKASLLA KAVERVRDLK QRVGEATAPA  120
HLFPTEHDEI VVLASGGGAV FEASVCCDDR SDLLPELIET LRALRLRTLR AEMATLGSRV  180
RNVLVLARET NGDDGGYGGS EDLASSIDGG NGGGDFLKEA LRALVERPGA GGAGDRSKRR  240
RVSNMNMQAA S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17058A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279661e-88KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981312.12e-85transcription factor bHLH106-like
SwissprotO806743e-40BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A368SD615e-84A0A368SD61_SETIT; Uncharacterized protein
STRINGSb01g003830.13e-81(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-24bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]