PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17116A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 361aa    MW: 38749.3 Da    PI: 10.4714
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17116AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13123174155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +r +h  +Er+RR+++N+ +++Lr l+P +   ++++ + a+i+  Av+++k+L+
  Oropetium_20150105_17116A 123 QRLNHIVVERNRRRQMNQHLATLRALMPRS---YARRGDQASIVGGAVNFVKELE 174
                                699***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.63E-15121191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-13121178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.49E-13121178No hitNo description
PROSITE profilePS5088814.678122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-9128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MALLDAVVFP QGDQRGPCCG SCGMTCVLTG YGVGGDELIE GVKMGSVMAQ DGEDLVAAAA  60
TPHARSAAWP AAVVGTAPTW AGTTVQPTTT QPPSSARKRL RRRQRRTAST TVPRKEARNA  120
ETQRLNHIVV ERNRRRQMNQ HLATLRALMP RSYARRGDQA SIVGGAVNFV KELEHRLQSL  180
LHSEKRRRHR YAAAAADDRH HAEPSAGFFT VPQYSVVSAA APDVAGSSSR RPGVADVEAA  240
VSDGHATVKV LAPWRPGRKL LLRLLLGMQR RHGLAALHLN VATTPARMAV FYSITLRVCM  300
YAQHVASIAH VINDVPWIFV VQMGDGCQLS SAGDVAAVVH DIVAEANAAK ECSTRACQNN  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103ARKRLRRRQ
296102RKRLRRR
397105KRLRRRQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17116A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966795.13e-70transcription factor bHLH94
TrEMBLA0A3L6S4D43e-78A0A3L6S4D4_PANMI; Transcription factor bHLH94-like
STRINGPavir.Db01842.1.p3e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-34bHLH family protein