PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17174A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GeBP
Protein Properties Length: 215aa    MW: 24624.7 Da    PI: 5.5783
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17174AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57346.97.9e-15772569
                     DUF573  5 rlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkv 69
                                lw++ Dei+lL G   fk+++g+ p   d+ ++yef+++si  + ++  +  K++rLK Kf++  
  Oropetium_20150105_17174A  7 TLWNDVDEIALLTGAAAFKQRNGVAPRLpDMGELYEFLRDSIAPHLNQAKVYYKLKRLKSKFQHTA 72
                               68**********************98877*********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-13773IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MASCRRTLWN DVDEIALLTG AAAFKQRNGV APRLPDMGEL YEFLRDSIAP HLNQAKVYYK  60
LKRLKSKFQH TAXXXXXXXX XXXXXXXXXX XXXXELAHLA EDGERPVEEG ADAEEAEGMH  120
ALQVHAGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX DEADEAETKW  180
RRHLEADMRM QMRWHDLGKE VYGLLMDAIK GLGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17174A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9562021e-41EU956202.1 Zea mays clone 1558951 mRNA sequence.
GenBankKJ7280571e-41KJ728057.1 Zea mays clone pUT6203 GeBP transcription factor (GBP10) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649213.14e-29STOREKEEPER protein
RefseqXP_008649214.14e-29STOREKEEPER protein
RefseqXP_008659132.15e-29STOREKEEPER protein
RefseqXP_020395036.14e-29STOREKEEPER protein
STRINGGRMZM2G008558_P022e-28(Zea mays)
STRINGGRMZM2G066373_P012e-28(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.15e-07DNA-binding storekeeper protein-related transcriptional regulator