PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_17186A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

HB-other

Protein Properties

Length: 38aa MW: 4599.33 Da PI: 12.3951

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_17186A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.8	1.2e-10	9	34	31	56
HHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56 ++ +++lgL+ rq+k+WFqNrR++ k Oropetium_20150105_17186A 9 TRTSRELGLKPRQIKFWFQNRRTQIK 34 56689*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	5.7E-8	10	34	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-8	11	36	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-9	11	35	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.414	12	36	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 38 aa Download sequence Send to blast
SPRSARILTR TSRELGLKPR QIKFWFQNRR TQIKEHY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_17186A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	4e-11	homeobox-7

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_17186A