PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17318A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARR-B
Protein Properties Length: 661aa    MW: 72502 Da    PI: 5.9397
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17318AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.21.9e-28208261155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Oropetium_20150105_17318A 208 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVDKLTRENVASHLQKYRL 261
                                79*******************.********************************8 PP
2Response_reg75.71.7e-25221301109
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge
  Oropetium_20150105_17318A  22 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAITALKLLREHRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGE 103
                                799********************.****************************************87754.558*********** PP

                                HHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                                 + + + +  Ga d+l Kp+  eel++
  Oropetium_20150105_17318A 104 TKSVMKGITHGACDYLIKPVRTEELRN 130
                                ************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.5E-1851660IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.8E-4119153No hitNo description
SuperFamilySSF521724.27E-3519148IPR011006CheY-like superfamily
SMARTSM004481.1E-2920132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.54121136IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-2322131IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.65E-2523135No hitNo description
PROSITE profilePS5129412.163205264IPR017930Myb domain
SuperFamilySSF466899.5E-20206265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-30206266IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25208261IPR006447Myb domain, plants
PfamPF002491.2E-6210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MEEKKAVVMG RERDQFPVGM RVLAVDDDPV CLKVLETLLR RCQYHVTTTN QAITALKLLR  60
EHRDMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NGETKSVMKG ITHGACDYLI  120
KPVRTEELRN IWQHVVRRKF SSRERSNLEV YKEPPTADSC YDDSQIVSRA SNHSGRLSKK  180
RKELHSEEED DGEENDFQEG DEPSAAKKPR VVWSVELHRK FVAAVNQLGI DKAVPKRILE  240
LMNVDKLTRE NVASHLQKYR LYLKRLSAVA SQQASIVAAL GGRDPSFLHM GGFEGLQSYQ  300
PFAPSTALPS FNPHGLLSRT SAGTFGIHDL ASAKLVQNVT NSGILSHSAD DTNKFQLARL  360
QESQQSNLAQ VSTTSLGLPE LQQKWIHQEN NDLSTVFSGS ALVNTMSDTL QSVTNIPLPP  420
QELLGCTQGK VTXXXXXXXX XXXSDLIGRT VGVSANLSQQ DALPRNVGFS ADPFDSLSAT  480
KLDTSFVPSQ NEADQTGKFL VGMPVGPSDS IMATNNSKCE ASSSGSTMLL PADTGRHSDY  540
SQFGIASSSR HEMDGIKQDR LHNQGLSSGS FNPSFNACMT EQANATVSPL IPQMKIVTSE  600
DKPKQKNVYD LGISKLHGGF TSSSCNFDGL LNSIIKAETD DISFTDNELG CDFFPLGACI  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-25204267164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17318A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964668.10.0two-component response regulator ORR22
SwissprotB8B3I40.0ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0A9CW650.0A0A0A9CW65_ARUDO; Two-component response regulator
STRINGSi006013m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-108response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]