PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_17444A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 327aa MW: 34798.4 Da PI: 8.3578

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_17444A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.7e-09	159	206	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq Oropetium_20150105_17444A 159 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 206 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-15	153	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.12E-10	153	210	No hit	No description
PROSITE profile	PS50888	14.627	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-14	155	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	159	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MRCPSPPPQE LPVSGAEIQG LIPGSAPAGP SPSSTALLGL PTSQAMELLL PRVAPPAPAP 60 TPAPSFPSDP HLVDRAARFS TFASPAPSSP SPTPPPPPPA PANAKRKADP ADRSSKGKAA 120 KKGKTTANAD ENKPTAGDGE DEKPAYVHVR ARRGQATDSH SLAERARREK INARMELLKE 180 LVPGCSKVSG TALVLDEIIN HVQSLQRQVE YLSMRLAAVN PRVDFAGLDS FLTAECGRLA 240 GLNCKNGIDL EQVNWPEMGV HGARHLMQLQ QQFWHGDLAH PHQAVTQWEK RGDGHPPVFS 300 NSSSSLFGYD LASSDLIMEA KLKHIQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_17444A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040729	0.0	BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
GenBank	BT062747	0.0	BT062747.1 Zea mays full-length cDNA clone ZM_BFb0340N22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347160.1	1e-155	uncharacterized protein LOC100273300
Swissprot	Q8VZ02	2e-61	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1D6P4V3	1e-153	A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRING	GRMZM2G378653_P02	1e-158	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_17444A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]