PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_17663A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

BES1

Protein Properties

Length: 198aa MW: 21347.7 Da PI: 8.8019

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_17663A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	205.1	2.1e-63	13	138	2	133
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaag 83 g++r ptw+ErEnn+rRERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+++ +g Oropetium_20150105_17663A 13 GGTRVPTWRERENNRRRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPPpaERHDPIG 96 789*********************************************************************99999* PP DUF822 84 ssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa 133 +sas sp+ss+q +sp++sy++sp+sssfps+ s+++i+l + Oropetium_20150105_17663A 97 RSASPSPCSSYQ--------PSPRASYNPSPASSSFPSSGSSSHITLGGN 138 ********........*******************999987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.2E-66	13	138	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTSGAGGSGG GLGGTRVPTW RERENNRRRE RRRRAIAAKI FAGLRAYGNY NLPKHCDNNE 60 VLKALCNEAG WTVEPDGTTY RKGCKPPPAE RHDPIGRSAS PSPCSSYQPS PRASYNPSPA 120 SSSFPSSGSS SHITLGGNNF IGGKLPYPMA EESFVEFLIC LILQVSTAST SLLQWWLNQC 180 TSDTSIQLSD SYTSNQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-26	16	90	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-26	16	90	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-26	16	90	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-26	16	90	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_17663A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813584.1	2e-61	protein BZR1 homolog 3
Swissprot	Q5Z9E5	2e-59	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A2S3HIR0	5e-60	A0A2S3HIR0_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DXP0	5e-60	A0A2T7DXP0_9POAL; Uncharacterized protein
STRING	Pavir.Da00929.1.p	2e-60	(Panicum virgatum)
STRING	Pavir.J12085.1.p	2e-60	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75080.2	7e-29	BES1 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_17663A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]