PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_17734A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Nin-like

Protein Properties

Length: 257aa MW: 28087.6 Da PI: 9.2546

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_17734A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.6	5e-23	15	61	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ Oropetium_20150105_17734A 15 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 61 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.665	1	83	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-21	16	61	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MASNAPAQPK PTRVSLSYEE ISKLFSLPIA EAASILGVCT SVLKRICRSH GIVRWPYRKL 60 VSGKAGDDPK NSEREKANKE LLEFSKAAKQ KPFSSSGPSA IHTDSAALAK DVSHESATHD 120 ASKGLTDDEL DWGADEGEGE ADGIVTRAEP SAQLCSLRRK AVDDGRKLLN GGARRGQQEF 180 SRLNKRQKVV LAQVFGASLP EEFVSSFAFS RASSALLHWR ERDRKIRFCT LRRADFWNRE 240 DVVDSEAAAA VAKFLD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_17734A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230688.1	5e-84	uncharacterized protein LOC104582530
TrEMBL	A0A0Q3ICD5	1e-82	A0A0Q3ICD5_BRADI; Uncharacterized protein
STRING	BRADI2G08600.1	2e-83	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_17734A