PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_17746A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 180aa MW: 19776.7 Da PI: 9.9623

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_17746A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99	4.8e-31	7	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilk 82 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ +++ +e r++a+++l++eA +r rdP +G+++ + Oropetium_20150105_17746A 7 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLVVKANATEpaRRRAAETLTWEALWRERDPSEGCYREVAG 90 7******************************************9888555445************************* PP DUF260 83 lqqqleqlkaelallkee 100 l+++ + l++e a+l+++ Oropetium_20150105_17746A 91 LRRENAVLRSENAALRRQ 108 ******9999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.317	6	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-27	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MMTSGGACAV CKHQRRKCEP NCELAAYFPA NRMNDFRALH LVFGVANLTK LVVKANATEP 60 ARRRAAETLT WEALWRERDP SEGCYREVAG LRRENAVLRS ENAALRRQFA SYGGGVAGGC 120 YNSNNGSAAP ANGGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXAAITM IRGNMNNPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-18	4	119	8	121	LOB family transfactor Ramosa2.1
5ly0_B	2e-18	4	119	8	121	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00128	DAP	Transfer from AT1G06280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_17746A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	5e-99	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314390.1	2e-60	LOB domain-containing protein 7
TrEMBL	I1HDS9	5e-59	I1HDS9_BRADI; Uncharacterized protein
STRING	BRADI2G08480.1	8e-60	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13044	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-23	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_17746A