PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17753A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 284aa    MW: 30821.1 Da    PI: 5.468
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17753AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.92.7e-24192243153
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                                k +++WtpeLH++Fv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ  
  Oropetium_20150105_17753A 192 KVKVDWTPELHRKFVQAVEQL-GIDKAVPSRILEIMGIECLTRHNIASHLQLP 243
                                5689*****************.*****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.361189250IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-22190242IPR009057Homeodomain-like
SuperFamilySSF466892.27E-15190244IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23192242IPR006447Myb domain, plants
PfamPF002491.3E-5195241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLEVSTLRSP SKADHHHHHH HVGGGFTTDD DDFMVVDGNL LDYIDFSSSS RCDVPSFFDA  60
EGDILPDLEV DPTELLAEFD GDINPACCHP QEAAHHGAAE EKPPDDDVAI ISSQQGHDNN  120
PAGGEEKKIE EGNDGPKKQK DNNPAGGEDE LSSAVTTEEG SASAAARSSS AEGQSKKTKP  180
SSSKKAHSNK RKVKVDWTPE LHRKFVQAVE QLGIDKAVPS RILEIMGIEC LTRHNIASHL  240
QLPRFLVPGM MAPHPMYRPI PPPQTSRTKL VQSLQHQLDA HPV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17753A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185821e-48AF318582.1 Oryza sativa putative transcription factor OsGLK2 (Glk2) mRNA, partial cds.
GenBankAK1210191e-48AK121019.1 Oryza sativa Japonica Group cDNA clone:J023049D13, full insert sequence.
GenBankCT8340421e-48CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence.
GenBankCT8340431e-48CT834043.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI203A14, full insert sequence.
GenBankCT8340441e-48CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818978.12e-63probable transcription factor GLK2 isoform X1
RefseqXP_025818980.11e-63probable transcription factor GLK2 isoform X3
RefseqXP_025818981.15e-64probable transcription factor GLK2 isoform X4
SwissprotQ5NAN53e-53GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0A9LLL42e-67A0A0A9LLL4_ARUDO; Uncharacterized protein
STRINGPavir.Ea00014.1.p3e-61(Panicum virgatum)
STRINGPavir.Eb00063.1.p3e-62(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.17e-27GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]