PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17766A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 618aa    MW: 67097.7 Da    PI: 7.6069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17766AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12466512455
                                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Oropetium_20150105_17766A 466 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 512
                                799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-5061246IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-18465527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-15465516No hitNo description
Gene3DG3DSA:4.10.280.105.5E-18466524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10466512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MVMKMEIEDD GATGGGTGGT WTEEDRALGA AVLGTDAFAY LTKGGGAISQ GLVATSLSVD  60
MQNKLQELVE SDRPGAGWNY AIYWQLSRTK SGDLVLGWGD GSCREPREGE VVAAASASND  120
DTKQRMRKRV LQRLHIAFGG ADEEDYALGI DQVTDTEIFF LASMYFAFPR RTGGPGQVFA  180
AGIPLWVPNS ERKVYPTNYC YRGFLANAAG FRTIVLVPFE NGVLELGSMQ HITESSDAVQ  240
TIRSVFSGAI DNKAAAQKPE GNGAAPTERS PSLAKIFGKD LNLGHPSAGP VVGVSKVDER  300
LWEQRSAAGG SSLPPNVQKG LQNFTWSQPR GLNSHQQKFG NGVLIVSNEA AQRSNGAADS  360
SSATQFQLQK VPPLQKLQLQ KLPQIPKTPP VVNHQQLQPQ VPRQIDFSAG SSSKPGVLVT  420
RTSVLDGESA EVDGLCKEEG PPPAVEDRRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ  480
RFYALRAVVP NISKMDKASL LGDAITYITD LQKKLKEMET ERERFLESGM VGGSSTRPEV  540
DIQVVQDEVL VRVMSPMENH PVKKVFQAFE DAEVRIGESK VTGNNGTVVH SFIIKCPGAE  600
QQTREKVIAA MSRTMNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-28460522264Transcription factor MYC2
5gnj_B5e-28460522264Transcription factor MYC2
5gnj_E5e-28460522264Transcription factor MYC2
5gnj_F5e-28460522264Transcription factor MYC2
5gnj_G5e-28460522264Transcription factor MYC2
5gnj_I5e-28460522264Transcription factor MYC2
5gnj_M5e-28460522264Transcription factor MYC2
5gnj_N5e-28460522264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447455RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17766A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816895.10.0transcription factor bHLH13-like
TrEMBLA0A3L6SNM90.0A0A3L6SNM9_PANMI; Transcription factor bHLH13-like
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-70bHLH family protein