PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_17891A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 173aa MW: 18479 Da PI: 10.4574

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_17891A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.2e-08	76	103	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 r+h+e+ErrRR+riN +++Lr ++P Oropetium_20150105_17891A 76 RNHSEAERRRRERINAHLATLRGMVPCT 103 58************************83 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.07E-8	67	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.55	73	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-8	76	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-7	76	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MSFCFADRLR RGSLNGDTMR SVPLSVDDSG LYAGFGGGHQ LAGASTMSVL LEDGNAEELD 60 DATKKKGGDK AATALRNHSE AERRRRERIN AHLATLRGMV PCTDKVCTLR FKFPVKVAAG 120 VVAPALARRR RRAGDVSSHA GDEAQRPATR AAVRAQAEQH RPPCPGCCVR PN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	85	KKKGGDKAATALRNHSEAERRRR
2	81	86	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_17891A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010915628.1	2e-13	transcription factor bHLH30
STRING	Pavir.Ea00157.1.p	4e-14	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20999	6	7

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_17891A