PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17988A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 24918.1 Da    PI: 5.4487
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17988AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.44.3e-141312151
                               HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                               +KKA EL +LCda++a+i+fs tg+lye+ss
  Oropetium_20150105_17988A  1 MKKARELGILCDADIALIVFSCTGRLYEFSS 31
                               8****************************96 PP
2K-box69.31.2e-2355144998
                      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                                +  ++a+ +q+e++ L+++++nLq ++R+llGe+L++L++++Lq L++q+e sl+ iR+kK++ll ++i +  ++  +lq+en 
  Oropetium_20150105_17988A  55 NPITEAKFWQREVTTLRQQVQNLQLNNRRLLGEELSDLTVRDLQFLQSQVEMSLQYIRKKKEQLLADEIIQISQQGLALQKENI 138
                                5567899***************************************************************************** PP

                      K-box  93 aLrkkl 98 
                                +L+k++
  Oropetium_20150105_17988A 139 ELTKEV 144
                                **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.432133IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-4132IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-16152IPR002100Transcription factor, MADS-box
PfamPF003199.0E-12129IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2158144IPR002487Transcription factor, K-box
PROSITE profilePS5129712.73160150IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKKARELGIL CDADIALIVF SCTGRLYEFS STSMKSTIER YQEAREETNN SRLLNPITEA  60
KFWQREVTTL RQQVQNLQLN NRRLLGEELS DLTVRDLQFL QSQVEMSLQY IRKKKEQLLA  120
DEIIQISQQG LALQKENIEL TKEVTNAHQQ KMELQKKLAG QSTSGGDREQ ASGGSSDDKS  180
HEQPTGVRIG DESAAVATEL GHFTALRELT AMWEWRMGGG *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17988A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817983.11e-83MADS-box transcription factor 25-like
SwissprotQ84NC54e-78MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A2S3HW572e-81A0A2S3HW57_9POAL; Uncharacterized protein
STRINGPavir.J07457.1.p3e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-46AGAMOUS-like 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]