PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_18122A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 385aa MW: 40441.6 Da PI: 8.2307

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_18122A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.5e-32	245	300	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Oropetium_20150105_18122A 245 KARRCWSPELHRRFVAALQRLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 300 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.156	242	302	IPR017930	Myb domain
SuperFamily	SSF46689	5.64E-17	243	303	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-29	244	303	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-26	245	300	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-7	247	298	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MGPAVRTMTE DVRALAARAA TDSLRAAAAR AGSGSSADRA ARFEECVRGL EAEKAKMEVF 60 RRELPISVRL VADVIEXXXX XXXXXXXXXX XHRAAPGLFA PAAAKRXXXX XXXXXXXDKR 120 SWMSSAQLWS CGSTHDDSTA NSNGGGGGAD KIKPAAHKAS NAFVLPALAT ALPPSDDAAE 180 KPAAAAAAAV PVVVPDLSLS SPAIDGGACP AAPSAASSAV TTDAAGAXXX XXXXXXXXXX 240 XXXRKARRCW SPELHRRFVA ALQRLGGAQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH 300 TRRASSDGSD QQAAMALWSS APDQQYTTSQ HSTSLSGSPQ GPLQLTVSSR AATGGDSCDG 360 DEEDGKSESY GWEMQQGATK TSSS*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MGPAVRTMTE DVRALAARAA TDSLRAAAAR AGSGSSADRA ARFEECVRGL EAEKAKMEVF  60
RRELPISVRL VADVIEXXXX XXXXXXXXXX XHRAAPGLFA PAAAKRXXXX XXXXXXXDKR  120
SWMSSAQLWS CGSTHDDSTA NSNGGGGGAD KIKPAAHKAS NAFVLPALAT ALPPSDDAAE  180
KPAAAAAAAV PVVVPDLSLS SPAIDGGACP AAPSAASSAV TTDAAGAXXX XXXXXXXXXX  240
XXXRKARRCW SPELHRRFVA ALQRLGGAQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH  300
TRRASSDGSD QQAAMALWSS APDQQYTTSQ HSTSLSGSPQ GPLQLTVSSR AATGGDSCDG  360
DEEDGKSESY GWEMQQGATK TSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-14	245	298	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-14	245	298	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-14	245	298	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-14	245	298	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_18122A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963026.1	1e-111	transcription factor HHO3
TrEMBL	A0A1E5VCU6	1e-120	A0A1E5VCU6_9POAL; Myb family transcription factor EFM
STRING	Pavir.Ca02525.1.p	1e-118	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5582	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	2e-35	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_18122A