PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18137A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 190aa    MW: 21108 Da    PI: 6.8721
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18137AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-13341011887
                                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                ++k++a ++ ++ ++++tl+l d ++++W ++l ++k+ gry l++GW +F ++++L+egD+++F+ ++ 
  Oropetium_20150105_18137A  34 MSKDYALKYLLEANGTITLSLPD-NSKTWAINLDINKH-GRYALSSGWLNFIHDKRLREGDICTFQPSKG 101
                                56788888877777877777777.77*******65555.58*************************6543 PP
2B344.33.2e-141301854598
                                EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
                         B3  45 sWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                                +We  +  + +++++ l++GW +Fv +n Lk+gD+++F+l+++  se ++ v+++r
  Oropetium_20150105_18137A 130 TWESGHEASACQQGHRLGRGWGQFVADNSLKVGDICLFELMKDmsSELTMSVHIIR 185
                                8*****88999999*************************99884555666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-4333IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-717113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.91417113IPR003340B3 DNA binding domain
CDDcd100173.00E-1422111No hitNo description
SuperFamilySSF1019361.29E-1332110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-1434110IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-1134103IPR003340B3 DNA binding domain
PROSITE profilePS5086310.01130187IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-13130186IPR015300DNA-binding pseudobarrel domain
PfamPF023629.6E-12130186IPR003340B3 DNA binding domain
CDDcd100172.06E-10130185No hitNo description
SuperFamilySSF1019363.14E-12131186IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
YVKIAKEEND LVFGSGWETF SSAHDLAYGD FLAMSKDYAL KYLLEANGTI TLSLPDNSKT  60
WAINLDINKH GRYALSSGWL NFIHDKRLRE GDICTFQPSK GNNNMALIFH PLEATSKTLW  120
FGLCKSISPT WESGHEASAC QQGHRLGRGW GQFVADNSLK VGDICLFELM KDMSSELTMS  180
VHIIRKGAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18137A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Y1098e-37A0A0D9Y109_9ORYZ; Uncharacterized protein
STRINGLPERR12G14620.11e-37(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-07B3 family protein