PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_18141A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 388aa MW: 42078 Da PI: 8.2805

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_18141A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33	1.3e-10	73	96	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 pr+rWt+ LH++Fv+ave LGG+e Oropetium_20150105_18141A 73 PRMRWTTALHAHFVHAVELLGGHE 96 9*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-8	70	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MSSTASTSVT PELSLHISPP SPAAGGCETP ELQLELDAVA KPVDQQRLHQ PSQTAHGFKK 60 SSGAGRKRSS RAPRMRWTTA LHAHFVHAVE LLGGHESHAG QMSRDMGFLM MRRAAAETDG 120 FDGFNSNNVV DTGALLFSNN STTSRRSSQS PGEEQQQLEH RHNAAWIQAL VVGNNELRRR 180 HQLLPPPCRL PPPAHHHHAI SPQQRPDRVL MEQCRQRQNS KEGAQRDHGE GAVVVHDLSE 240 APGPAGPVVI IQQQKKGLLL PPVPPPPPPL HQHMVAPRPS SNTSSSRGGY DVAWSYDWLQ 300 YQVPAYSSSS SGSNDDSGAI STTTTTKTAP PSLEMSLGRQ GWQIMEQQCG GGAGEFEPSP 360 SAKERTTLLK CLLTXXXXXX XXYNTLI*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MSSTASTSVT PELSLHISPP SPAAGGCETP ELQLELDAVA KPVDQQRLHQ PSQTAHGFKK  60
SSGAGRKRSS RAPRMRWTTA LHAHFVHAVE LLGGHESHAG QMSRDMGFLM MRRAAAETDG  120
FDGFNSNNVV DTGALLFSNN STTSRRSSQS PGEEQQQLEH RHNAAWIQAL VVGNNELRRR  180
HQLLPPPCRL PPPAHHHHAI SPQQRPDRVL MEQCRQRQNS KEGAQRDHGE GAVVVHDLSE  240
APGPAGPVVI IQQQKKGLLL PPVPPPPPPL HQHMVAPRPS SNTSSSRGGY DVAWSYDWLQ  300
YQVPAYSSSS SGSNDDSGAI STTTTTKTAP PSLEMSLGRQ GWQIMEQQCG GGAGEFEPSP  360
SAKERTTLLK CLLTXXXXXX XXYNTLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_18141A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805465.1	4e-53	uncharacterized protein LOC112884302
TrEMBL	A0A0A9GQA6	1e-70	A0A0A9GQA6_ARUDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27424	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	1e-09	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_18141A