PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18173A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 176aa    MW: 19315.7 Da    PI: 11.2606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18173AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28.1e-151562355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               ++h+  E+rRR +iN+++ +L++l+P +      K + a+iL ++++Y+ksLq
  Oropetium_20150105_18173A 15 ETHSLTEKRRRWKINEKLKTLQQLVPGC-----DKGNQASILDQTIQYMKSLQ 62
                               69*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9421261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-171373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-191573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.07E-141566No hitNo description
PfamPF000101.9E-121562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-131867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKKPAAGGGR RYHSETHSLT EKRRRWKINE KLKTLQQLVP GCDKGNQASI LDQTIQYMKS  60
LQQQIQAMAI GHSMSSATAA AYPVVVQQPY PAPAASGLPP PPPQATMLVR GVLVPPVGVP  120
ALPTAAPSFV PMLPLVRHHR PALMVRTAAA PYCSILKPLF RMWHRRQLET RVNYT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025EKRRRW
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18173A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442458.18e-31transcription factor APG
TrEMBLA0A2T8KLV93e-34A0A2T8KLV9_9POAL; Uncharacterized protein
STRINGSb08g020300.13e-30(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-18phytochrome interacting factor 3-like 5