PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18220A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LSD
Protein Properties Length: 167aa    MW: 17436.6 Da    PI: 8.4407
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18220AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.78.1e-13730124
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                               C+gCr lL YPrGApsV+Ca+C+ 
  Oropetium_20150105_18220A  7 CHGCRSLLLYPRGAPSVCCAVCHS 30
                               **********************96 PP
2zf-LSD141.32.4e-134670125
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                               CggC+tlL+Y+ +A+ VRC++CdtV
  Oropetium_20150105_18220A 46 CGGCQTLLMYTHNATTVRCSCCDTV 70
                               ************************9 PP
3zf-LSD146.94.5e-1584108125
                    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                Cg+C t+L+YP+GApsV+Ca+C+++
  Oropetium_20150105_18220A  84 CGQCLTVLMYPYGAPSVKCAICNFI 108
                                ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-11434IPR005735Zinc finger, LSD1-type
PfamPF069439.6E-11730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-124473IPR005735Zinc finger, LSD1-type
PfamPF069437.3E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.0E-1181110IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-1384108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQSQIVCHGC RSLLLYPRGA PSVCCAVCHS MTSVPPLGME MARLICGGCQ TLLMYTHNAT  60
TVRCSCCDTV NLVRQVSSIA HVNCGQCLTV LMYPYGAPSV KCAICNFITN VGVTAVRPLP  120
PALPAPPSPT NKSKNITVVV ENPMTVDEKG KLVGNVVLGV TTGGKS*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18220A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805781.19e-97protein LOL2-like isoform X2
SwissprotQ2QMB36e-88LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0A9MMP51e-97A0A0A9MMP5_ARUDO; Uncharacterized protein
STRINGSb08g021100.13e-93(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.14e-52lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]