PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18311A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 28851.6 Da    PI: 7.2443
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18311AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s
  Oropetium_20150105_18311A  9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59
                               79***********************************************96 PP
2K-box75.71.2e-25711711100
                      K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                yq++++++  e ++ ++   e++++k+e+++L++ +R++ G+dL+sL+l +++ LeqqLe s++k+R++K+ell +q+++l++k
  Oropetium_20150105_18311A  71 YQHTTSNHfHEINHDQQIFLEMTRMKDEVDKLETGIRRFTGDDLSSLTLSDINDLEQQLEFSVNKVRTRKHELLSQQLDNLRRK 154
                                56666666678888999999**************************************************************** PP

                      K-box  84 ekelqeenkaLrkklee 100
                                e+ l++en +L ++++e
  Oropetium_20150105_18311A 155 EHILEDENSMLGRMINE 171
                                ***********999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.198161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-32290IPR002100Transcription factor, MADS-box
CDDcd002656.10E-43278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-2481169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.60385175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP  60
TSSLRELIEQ YQHTTSNHFH EINHDQQIFL EMTRMKDEVD KLETGIRRFT GDDLSSLTLS  120
DINDLEQQLE FSVNKVRTRK HELLSQQLDN LRRKEHILED ENSMLGRMIN ENQQNHLAVG  180
RGDLKLTEMP PLAMLPPAAF GQAYYGGESS SSTALQLMSA APQLHHHGGG GFRLQPTQPN  240
LQDFHHGHHG LQLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-19185183MEF2C
5f28_B8e-19185183MEF2C
5f28_C8e-19185183MEF2C
5f28_D8e-19185183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18311A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393159.11e-139MADS-box protein ZMM17 isoform X1
RefseqXP_020393160.11e-139MADS-box protein ZMM17 isoform X1
RefseqXP_020393161.11e-139MADS-box protein ZMM17 isoform X1
SwissprotQ8VWM81e-138M17_MAIZE; MADS-box protein ZMM17
TrEMBLA0A1D6H1J31e-138A0A1D6H1J3_MAIZE; Zea mays MADS17
TrEMBLA0A3L6ESV61e-138A0A3L6ESV6_MAIZE; MADS-box protein ZMM17
STRINGSb04g004736.11e-136(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.26e-52MIKC_MADS family protein