PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18312A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YC
Protein Properties Length: 298aa    MW: 33136.2 Da    PI: 4.8674
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18312AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.33.1e-551182221102
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaa
  Oropetium_20150105_18312A 118 QLREFWSTQmddIEQTTDFKNHNLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAA 201
                                89******988889********************************************************************** PP

                      NF-YC  82 avtrtdifdflvdivprdelk 102
                                a+trtdi+dflvdi+prde+k
  Oropetium_20150105_18312A 202 AITRTDIYDFLVDIIPRDEMK 222
                                ******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-3389212IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.8E-37132204IPR009072Histone-fold
PfamPF008081.0E-20140203IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSGITEGLTG FTSTHFQFID SEYERKVTGF GRRSSDMEPS SQPQPVRGVT AGTQGYPAAT  60
AAYPPPAMVP RAPAGLPPGS QPTVPFPPNP AQPSAQHQLV YQQAQQFQQQ LQQQQQQQLR  120
EFWSTQMDDI EQTTDFKNHN LPLARIKKIM KADEDVRMIS AEAPVVFAKA CEVFILELTL  180
RSWMHTEENK RRTLQKNDIA AAITRTDIYD FLVDIIPRDE MKEEGLGLPR VGLPPAIGAP  240
ADSYPPYYYM PAQQVPGAGM MYAGQQGHPV TYVWQQQPQG QDGEPPEDHQ QSLPENS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-57125218295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18312A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627520.11e-126nuclear transcription factor Y subunit C-4-like
RefseqXP_015627522.11e-126nuclear transcription factor Y subunit C-4-like
SwissprotQ655V51e-115NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0A9DJK51e-133A0A0A9DJK5_ARUDO; Uncharacterized protein
STRINGLPERR02G04650.11e-133(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-73nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]