PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18342A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 368aa    MW: 38778.3 Da    PI: 4.1591
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18342AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.32.5e-1077148165
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkik 65 
                                +W   e+laL++ +  +++  +r+ ++ ++W+ v++++       ++rg +r++ +C+ +we l+ +y +++
  Oropetium_20150105_18342A  77 EWAPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaasdafrARRGSKRTAAECRRRWEALAAEYGAVR 148
                                5*******************************************************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-676150No hitNo description
PROSITE profilePS500906.81878141IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDPADPPCII QALRAQPQSS SALPPPRPPL VQALPAKDHP LAAAAASSVS RSPKRRPPPA  60
GPAPPSPRRT RSGGAPEWAP AETLALVAEV AAVDDGWSRS VSAFQKWAMV AENLAASDAF  120
RARRGSKRTA AECRRRWEAL AAEYGAVRRA GDAYWEMTAA TRSKAGLPAR FDAEVYGAMD  180
ALIRVEEALL ADAVGSATGV EAVEGLVGGG GAGGGDVGEE EDGGEAEVGE DELNKDDESA  240
DEEEEDDGDE GEEDEEEMQA DAGNADDASN DSEGQEGKAN NKTENSQNIA WELANKLQES  300
AQHIHTVLNE EADGQNRAFA YSTPLHAMTT TRQKADELIK SLGGLLGYLN QFTELIKETG  360
FENVGMT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18342A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341134e-61BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds.
GenBankBT0857104e-61BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds.
GenBankEU9699574e-61EU969957.1 Zea mays clone 337834 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701598.11e-123trihelix transcription factor ASR3
TrEMBLA0A368PHJ71e-122A0A368PHJ7_SETIT; Uncharacterized protein
STRINGSb04g004960.11e-118(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-13sequence-specific DNA binding transcription factors