PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18364A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 406aa    MW: 43206.7 Da    PI: 8.3428
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18364AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.4e-40181257177
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                +Cq+egC+adls ak+yhrrhkvCe h+ka +v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++
  Oropetium_20150105_18364A 181 RCQAEGCKADLSAAKHYHRRHKVCEYHAKAGAVAAAGKQQRFCQQCSRFHVLAEFDESKRSCRKRLTEHNRRRRKPA 257
                                6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-33174243IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132179256IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-37180257IPR004333Transcription factor, SBP-box
PfamPF031102.1E-30182255IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MQMQQPYLGC FDAGMSMPPN IVVERPLLQQ QQNTVYENFD FAAAGFPLQQ ADSSSLLPPT  60
TSLPLAVPPP SLMPSALQMR PLVTLPGVPT AELYHPFVGG GPSSPPFLKR EEDGPVGSGG  120
RIGLNLGRRT YFSPADVLAV DRLLTRSRLG GGGMGLGMGM GMAGVLGLGL GAAHHHHQPP  180
RCQAEGCKAD LSAAKHYHRR HKVCEYHAKA GAVAAAGKQQ RFCQQCSRFH VLAEFDESKR  240
SCRKRLTEHN RRRRKPAGAQ GKDDSPPPPK KADTASISTS YNSDYKSAST AAAKSTAISP  300
NGSGVSCLDM DNGQTSSAAA PTALSLAALP PLPAAEKDGG LDTMLMQQVR GRRRDVDDDE  360
QHFMTSLELQ AAHHQHHNGS GNILSTSDHQ QNGGGCNGFF EVDFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-281822551184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238255KRSCRKRLTEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18364A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451645.21e-153squamosa promoter-binding-like protein 5
SwissprotQ0E3F88e-68SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLA0A1Z5RL611e-151A0A1Z5RL61_SORBI; Uncharacterized protein
STRINGSb04g005180.11e-152(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-40squamosa promoter binding protein-like 8