PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18450A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 166aa    MW: 18364.5 Da    PI: 8.3353
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18450AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.8e-1177124552
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                                ++ rr+++NRe+ArrsR RK+ ++  L   v+eL + N++L  el++ 
  Oropetium_20150105_18450A  77 RKKRRLASNRESARRSRVRKQRRLGDLSSQVAELREMNQRLLVELNRV 124
                                6889**************************************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.2E-972124No hitNo description
SMARTSM003387.6E-973137IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.74975138IPR004827Basic-leucine zipper domain
PfamPF001701.7E-877123IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.47E-977127No hitNo description
PROSITE patternPS0003608095IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MQHNCVGVGT LACLSSFDFT SSFLLQNDPY GFGLLDLVAG PPYDSCKGST TISSSLPPPA  60
GTTADDNRGR RSSNDERKKR RLASNRESAR RSRVRKQRRL GDLSSQVAEL REMNQRLLVE  120
LNRVIAKHAR IARENAELRE EACDLLRRLN EMEVEEGAEE GANST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16778RGRRSSNDERKK
28995RRSRVRK
38996RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18450A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660928.11e-49basic leucine zipper 8
TrEMBLK3YXV13e-48K3YXV1_SETIT; Uncharacterized protein
STRINGSi019099m4e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.12e-06basic leucine-zipper 58