PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18686A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WOX
Protein Properties Length: 513aa    MW: 57278 Da    PI: 7.2141
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18686AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.5e-21336396257
                                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                r+R+++t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Oropetium_20150105_18686A 336 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 396
                                89*****************99**************************************97 PP
2Wus_type_Homeobox99.91.9e-32335398265
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                ar+RW Ptp Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  Oropetium_20150105_18686A 335 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 398
                                789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165448.9E-113679IPR032377STAR protein, homodimerisation region
Gene3DG3DSA:3.30.1370.108.5E-33137245IPR004088K Homology domain, type 1
SMARTSM003222.8E-6140236IPR004087K Homology domain
CDDcd023951.63E-36145247No hitNo description
SuperFamilySSF547911.65E-25145247IPR004088K Homology domain, type 1
Gene3DG3DSA:1.10.10.605.0E-17331402IPR009057Homeodomain-like
PROSITE profilePS5007114.9332397IPR001356Homeobox domain
SMARTSM003892.7E-14334401IPR001356Homeobox domain
SuperFamilySSF466894.28E-18335400IPR009057Homeodomain-like
PfamPF000469.0E-19336396IPR001356Homeobox domain
CDDcd000861.24E-13336398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MEALTATDKC FSPARGMSPM PIMRPPPSPS PEAARRSQYL EELLQEQQKL GPFVQVLPIC  60
GRLLNQEIMK ISSMLPHLGV RGNERPPIAS PDPMYPSPRV PNFYANGFGP WNGMHPERNG  120
FPRGTMGWQG AAQNHSSYIV KKIVKLEVPT DAYPNFNFIG RLLGPRGNSL KRVEATTGCR  180
VFIRGKGSIK DPAKEEQLKG RPGYEHLSQP THILIEAELP ADVIDVRLTQ AQEILEELLK  240
PVPEPMEWGE RAKAAAAGVA EERGGGGEPL GYVKVMTDEQ METLRKQISI YATICEQLVE  300
MHRAVTEHQD SIAGMRFSNL YCDPLIVPGG HKITARQRWQ PTPMQLQILE NIFDQGNGTP  360
SKQKIKEITA ELSHHGQISE TNVYNWFQNR RARSKRKQAA ALPNNVESEA EADEESLTDK  420
KPKSDMQLQQ SQDLSAHNVD RISEMHRLQR EQMGGMIYGS NDNSLRSSGS SGQMSFYENI  480
MSNPRIDQFP GKVESSRSFS HLQHGDGFDM FG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4jvh_A2e-2613924474179Protein quaking
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389397RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18686A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288365.11e-157WUSCHEL-related homeobox 8-like
SwissprotQ5QMM31e-119WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLC0P6K01e-156C0P6K0_MAIZE; HB transcription factor
TrEMBLK4JE981e-156K4JE98_MAIZE; HB-type transcription factor (Fragment)
STRINGGRMZM2G038252_P021e-157(Zea mays)
STRINGGRMZM2G069274_P011e-157(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.18e-56WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]