PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_18730A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 258aa MW: 27036.5 Da PI: 6.1554

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_18730A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.3	8.4e-41	63	162	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+sslvyeA+ r+rdPvyG++g i+ lq Oropetium_20150105_18730A 63 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPEVERADAASSLVYEANLRLRDPVYGCMGAISVLQ 146 7********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 qq++ l+ael+++++e Oropetium_20150105_18730A 147 QQVNALEAELDAVRAE 162 *********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.293	62	163	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-40	63	160	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSTESSACWS LTRERLDEIG KKIKREPDAT GIAAATASAS TALVENPVPR SLGLGGALNT 60 VTPCAACKLL RRRCAQECPF APYFSPHEPH KFAAVHKVFG ASNVSKMLLE VPEVERADAA 120 SSLVYEANLR LRDPVYGCMG AISVLQQQVN ALEAELDAVR AEIFKHRYRQ AGAGAGLTDD 180 DVQATARFVA PHPPLLAGDV VSVAEAGQDI ANPAGVPAGM SAAAASAVYI AKAVEQPSST 240 TDHYSSLNTS EHASYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	63	166	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	63	166	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_18730A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121919	1e-132	AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970407.1	1e-115	LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-68	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1E5VHX5	1e-123	A0A1E5VHX5_9POAL; LOB domain-containing protein 15
STRING	Pavir.Eb03580.1.p	1e-119	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-69	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_18730A

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]