PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18797A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 355aa    MW: 40603.5 Da    PI: 5.0031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18797AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.4e-0679102226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                k  lC ff   G+C+ G +CkF+H+
  Oropetium_20150105_18797A  79 KSILCEFFKV-GQCQKGFKCKFSHD 102
                                6779**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.33E-677102IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-477103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.83177104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-479103IPR000571Zinc finger, CCCH-type
SMARTSM003564.3147184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953147185IPR000571Zinc finger, CCCH-type
PfamPF165437.8E-15204283IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MPPKKAQPSK ADLAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQAKKKE EEKAREKELN  60
DLFKVAVSQP KVPVGVDPKS ILCEFFKVGQ CQKGFKCKFS HDLNVQRKGE KIDIYTDKRD  120
AETMEDWDQE TLEKVVESKK TEYQQNKPTD IVCKYFLDAV EKKQYGWFWV CPNGGKDCHY  180
RHALPPGYVL KSQMKALLEE ESEKIAIEDE IEDERKKTKT STPMTTELFM EWKRKKAEER  240
EVGLAALRVE RAKNDRMSGR ELFMADASVF VDDAEAYEIY ERHEESEANE EQIKKSQDAG  300
PSSSTSNGKQ AEEPDDDDDI NIDDDLGLDE LNELEASLSR TSIQIREPGE GTSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214235RKKTKTSTPMTTELFMEWKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18797A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646456.20.0PREDICTED: zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A0D3EVY10.0A0A0D3EVY1_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YGX80.0A0A0D9YGX8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0C9Y50.0A0A0E0C9Y5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FVE60.0A0A0E0FVE6_ORYNI; Uncharacterized protein
STRINGOGLUM01G40200.10.0(Oryza glumipatula)
STRINGOMERI01G32850.10.0(Oryza meridionalis)
STRINGONIVA01G41290.10.0(Oryza nivara)
STRINGOBART01G36310.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-146C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]