PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18840A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WOX
Protein Properties Length: 348aa    MW: 37673 Da    PI: 8.6103
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18840AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.94.6e-1550105757
                                --HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   7 ftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +tkeq+ +Le l+ +   +p+ae++++++++l     ++ ++V++WFqN++a+ ++
  Oropetium_20150105_18840A  50 PTKEQVAVLEGLYDRgLCTPTAEQIQHITSQLqehgPIEAKNVFYWFQNHKARLRQ 105
                                8*************99****************99999****************996 PP
2Wus_type_Homeobox92.24.8e-3049107765
          Wus_type_Homeobox   7 tPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                 Pt+eQ+ +Le ly++Gl tP++e+iq+it++L+e+G ie kNVfyWFQN+kaR rq+q
  Oropetium_20150105_18840A  49 XPTKEQVAVLEGLYDRGLCTPTAEQIQHITSQLQEHGPIEAKNVFYWFQNHKARLRQRQ 107
                                6********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.28441106IPR001356Homeobox domain
SMARTSM003895.2E-443110IPR001356Homeobox domain
SuperFamilySSF466894.38E-1050113IPR009057Homeodomain-like
PfamPF000461.5E-1250105IPR001356Homeobox domain
CDDcd000863.50E-451107No hitNo description
Gene3DG3DSA:1.10.10.602.8E-651105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
METPQGGAGG GQGEAAAAAG GSSSEPPRSP PPLSPTSAAX XXXXXXXXXP TKEQVAVLEG  60
LYDRGLCTPT AEQIQHITSQ LQEHGPIEAK NVFYWFQNHK ARLRQRQRQD SFAYFTRLLR  120
RPPPLPLIAG PPGSGQQQTS YPTLGRXXXX XXXXXXXXXL VMTMGPPQIP RNNNAVVGGS  180
HRVVYRAPYY MPAPPQHQAS SGHAAGCYNY NLQQQAAAHH MAVMYSRSEM AQQRQMNPAM  240
MYSYGMGGSA LQXXXXXXXX XXGASASRVV GRRSRETLEL FPLQPTFLQA ENARGNVLTS  300
ASTPSAPASS SFPGGEFENP VVVEEGPDSN AEELPFYDFL GLQSAGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18840A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902355e-82AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene).
GenBankBT0370095e-82BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds.
GenBankEU9540625e-82EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds.
GenBankKJ7283845e-82KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.17e-24WUSCHEL related homeobox 2