PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18927A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 564aa    MW: 60444.1 Da    PI: 8.7734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18927AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-11355398452
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                                +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ eY++
  Oropetium_20150105_18927A 355 NHMISERRRRERLNESFEVLRGLLPPG-----SKKDKATVLAKTLEYMN 398
                                78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16352418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15354420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-9355398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.53E-5366405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDGLFALGQE SRLRILQQAA ARIPGCAYLC AWAPLAGGPA SSSSSSTPTS TRRLLRCVDA  60
CLCDAGARAD GGRVRALFDA YRVSLCPAVS GCVPGWAYID GRAYMELPAH DLTASASLPQ  120
QQQFYQEAGI KMAAFMGCES GEIEVGMSXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
EFLHLPLTRP SSSSSSLPSV SVDSPAAEGS TSRLRTTVAA AGTPSSGERW VPAHPPLPAL  240
PFGRHGYVHF PSPEADDAAM AQAMLDVISG ASSSSPRRRG ATTRATAFRA YNAALAPRAP  300
RRQPGQRMIK TSISILRRMH VLRFSRERSD AGAEMVQQRS QDDEAPAVPS SSQLNHMISE  360
RRRRERLNES FEVLRGLLPP GSKKDKATVL AKTLEYMNIL VSQISDLEAR NRSLENRAHQ  420
RANGGSKELM YYYSSLAEPH QDSTMMQRPS GGGSTPAERV QVHVSGGAST SSSPPQEVTV  480
RVAVRAEGDV AELVTRVLAA IRETGRRFTV ASVDARRSAG DGGAAQATVT LRATACDLDE  540
VSLKEAVMKA AEDSATAPSS DHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359364ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18927A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792416.11e-172putative transcription factor bHLH041 isoform X1
TrEMBLA0A3L6QIR41e-173A0A3L6QIR4_PANMI; Uncharacterized protein
STRINGSi019540m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-15bHLH family protein