PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19168A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 371aa    MW: 40388.6 Da    PI: 7.4318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19168AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-071361681955
                                HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++e LrellP+     ++K +Ka+ L +++eYIk Lq
  Oropetium_20150105_19168A 136 RLEILRELLPHG----DQKRDKASFLLEVIEYIKFLQ 168
                                5899*******7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.655117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-9134179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-7136172No hitNo description
PfamPF000106.1E-5136168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-11137183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MQLFQGEKPA HDFLSLHTGG GASSPVEPST QASVYDLGVH STLKPLKLSK QRGRGAIAVA  60
SSGFVEADSD EHLLPGGAGT FNIRTVPSSS GLHGSRTEGA HGAESGARAH SGPSTMWQDS  120
GTDQRSRKYL FMFPFRLEIL RELLPHGDQK RDKASFLLEV IEYIKFLQEK VQKYESANPE  180
RNHEDSKSMP WAKVYYRSCW KSTQNISQVQ GGLSASQDVN NEQCGSKPTT VAPAALFGAQ  240
SIRETTTDVS SSQKVANTAL NGEKNSTPSK QTQWLSISTC DSGNRPLSTY EREPVHKDTR  300
SLSNAYSQGL LHRLTEALKG SGVDPTQTNI SVEINMDRED REHGNAHGNS KNVEGDECTH  360
VAKRLRCDTS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19168A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798281.11e-157transcription factor BIM2-like isoform X1
TrEMBLA0A2S3GTA61e-156A0A2S3GTA6_9POAL; Uncharacterized protein
STRINGSi016505m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.16e-25BES1-interacting Myc-like protein 2