PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19180A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YB
Protein Properties Length: 83aa    MW: 9404.49 Da    PI: 4.5027
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19180AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB44.53.8e-143415795
                      NF-YB 57 ekrktingddllwalatlGfedyveplkvylkkyreleg 95
                               ++r+ti+++d++w++  lGf+dyvep ++y+++yre ++
  Oropetium_20150105_19180A  3 QHRRTIAPEDFIWSFERLGFDDYVEPRSTYIRRYRENQN 41
                               79*********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.58E-8243IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-9342IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MAQHRRTIAP EDFIWSFERL GFDDYVEPRS TYIRRYRENQ NAGGIVPQPC PSPPQVVSSF  60
TDEEVQFLKS VVPLPCDDVT SS*
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19180A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649006.18e-19PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ6Z3486e-17NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBLA0A0D9VKG62e-18A0A0D9VKG6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0K4P72e-18A0A0E0K4P7_ORYPU; Uncharacterized protein
STRINGOPUNC02G28490.14e-19(Oryza punctata)
STRINGLPERR02G25190.13e-19(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136592631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-11nuclear factor Y, subunit B6