PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19340A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 472aa    MW: 52731.3 Da    PI: 5.6312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19340AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10271317354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +a+ + Er RR+++N ++  Lr+l P++      K + a+i+  A+eYI++L
  Oropetium_20150105_19340A 271 KANFATERERREQLNVKYGALRSLFPNP-----SKSDRASIVGDAIEYINEL 317
                                68899**********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.611268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.16E-12269330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7271317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-8274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-10275328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-7277322No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MIASGCHFDG SQDPMIMAGS MIHDSSQSSI YYTTNAEEQN FRIASFDLSN PADADLTSEP  60
GRAIDHLQHH LGIDMEQNYG GHMILEAPPM ETANLVSAIC GVQDHILSHQ IGEGPHNMTM  120
EQQIVNYDAA SYPNSAYTDA HDFLNVMQIQ RCNLTPEFPS AEHVIGDPVQ NTINQLDMNT  180
DLSGVDMHES GMIFSDSTLP LGYHATQSHL LKDLYHSLPQ NYWLFTSDDE RDGMIVPGVS  240
GNILHEMDGR QIDSPTMGRR RKGGFGKAKG KANFATERER REQLNVKYGA LRSLFPNPSK  300
SDRASIVGDA IEYINELNRT VKELKILVEK NRNSTGRRKM LKLDDEAADD GDNSSMQPVR  360
DDQNNQMHGA IRSSWVQRRS KECEVDVRIV DDEINIKFTE KKRANSMLCA AKILEEFRLE  420
LMHVVGGIIG DHHVFMFNTK IPKGSSVYAC MVAKKLIEAV DMKHQAFGIF N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335342GRRKMLKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19340A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452697.10.0transcription factor EAT1
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLC5Y0E40.0C5Y0E4_SORBI; Uncharacterized protein
STRINGSb04g030850.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-50bHLH family protein