PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19361A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 357aa    MW: 38168.8 Da    PI: 9.1166
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19361AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.1e-32172225255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                pr+rWt+ LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Oropetium_20150105_19361A 172 PRMRWTTSLHARFIHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 225
                                9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-28169225IPR009057Homeodomain-like
SuperFamilySSF466894.12E-15170226IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23172226IPR006447Myb domain, plants
PfamPF002491.4E-7173224IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MELFPAHPDL QLQISPSPAT KPMDLGFWKR ALDSTPVATS TAAAATSTTP PSIAIASTAP  60
TGVGFHHPTA AVHHQGAAGH LGVGALPFLH HTQPILPDSS GLRDLASMRP IRGIPVYNTS  120
QALPFLQSHP HHHHHHQHCY DAIGIGHSAG PRSPKAALRL AGAPTKRGSR APRMRWTTSL  180
HARFIHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTIKTTD HKPASASSYG  240
QAASKTIIDI PDDSLFDVTT TNTTSGSESS AQQSNPDGNE HGSSMCALWS NSSISRGAWF  300
HDKPSRDATP GDIKSFEDVQ SRSLDDVADL TSSPFHATGM HRSKKKPNLD FTLGPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-16173227357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16173227357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16173227357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16173227357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19361A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369119e-90BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds.
GenBankKJ7268299e-90KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811930.10.0probable transcription factor KAN2 isoform X2
TrEMBLA0A1E5VN240.0A0A1E5VN24_9POAL; Putative transcription factor KAN2
STRINGPavir.Ab02797.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-41G2-like family protein