PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19386A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 358aa    MW: 37920.9 Da    PI: 6.3456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19386AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1494145155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +r++h ++Er+RR+++N+ ++ Lr+l+P+a   + ++ + a+i+  A+e++k+L+
  Oropetium_20150105_19386A  94 QRMTHIAVERNRRRQMNEYLAALRSLMPEA---YVQRGDQASIVGGAIEFVKELE 145
                                79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.90E-1592149No hitNo description
SuperFamilySSF474591.24E-1792161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.61293144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1594162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-1294145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1299150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSALVDALCA PPSSGDPAAL IYDTFNAASF FFDNAAAFYD SGIVTVTAPA PVHPNDVAGT  60
AAAVDSTTTS LAPRRKRRRR AVRSCKSKEE AESQRMTHIA VERNRRRQMN EYLAALRSLM  120
PEAYVQRGDQ ASIVGGAIEF VKELEQQLQS LEAQKRTLVR DLHKEAKPEA VTPPKHAANA  180
AAVVVATATP TCAAAAESAT TTSNCSSSVT EDAPDALPPP FARFFTYPQY VWCHGQPRDC  240
ATTTAAAEDG GGEGRPGVAD VEVTLVETHA SVRVMAPRRP GQLLRMVSGL QALRLTTLHL  300
TVTALDALAL YTLSVKVEEG CCLTTVEDIA GAVHQVLCMI DADAATRHLL GVGAEGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RRKRRRR
27478RKRRR
394105RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19386A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350323e-77BT035032.1 Zea mays full-length cDNA clone ZM_BFb0033F17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800848.11e-140transcription factor bHLH94-like
TrEMBLA0A2T7FAP71e-140A0A2T7FAP7_9POAL; Uncharacterized protein
TrEMBLA0A3L6QDM11e-140A0A3L6QDM1_PANMI; Transcription factor bHLH94
STRINGPavir.Ab02502.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-31bHLH family protein