PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19457A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CPP
Protein Properties Length: 150aa    MW: 16239.6 Da    PI: 7.3729
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19457AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.79.4e-081348540
                        TCR  5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                               +CnCk s C ++ C+Cf +  +Cs+ CkCe C+N+e
  Oropetium_20150105_19457A 13 SCNCKTSLCCQLQCSCFRKLWHCSDACKCECCRNTE 48
                               7*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163411.042149IPR005172CRC domain
SMARTSM011140.001950IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-51348IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVAMDMDVDP RPSCNCKTSL CCQLQCSCFR KLWHCSDACK CECCRNTEAY EAFVEECAEI  60
ILKKTPRAFQ RKGGCGCLKV ACSKTSAAAS RQGNPPPAPA PVSSPEPGGV LGEMPVPRVC  120
QHARSKESNS DPSAFYKSFL DEECFSQNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19457A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SGH08e-12A0A3L6SGH0_PANMI; Protein tesmin/TSO1-like CXC 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.11e-06Tesmin/TSO1-like CXC domain-containing protein