PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_19695A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 233aa MW: 26508.3 Da PI: 8.2123

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_19695A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.7	2.7e-05	13	61	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 r++ + erE+ Rd++N+ f eL ++l ++ + + Ka iL +++ +++ Oropetium_20150105_19695A 13 RKVHKAEREKLKRDNLNDLFVELGDMLDED----RQNNGKACILADTTRILRD 61 678889*********************997....4556666677666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.6E-10	9	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-12	9	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.55	12	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
PVAGKKIQKK APRKVHKAER EKLKRDNLND LFVELGDMLD EDRQNNGKAC ILADTTRILR 60 DLLSQVESLR MENSTLQNES HYVTMERDEL RDETSALGKE ILELQNELRM RLSXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXPL QQPRSSTAVI ELPYVAAPRE LKLFPRAGYE 180 PAKDKEATNH VTRPQARYPM QAASWPVNLF SGLPRMEDEQ CSSTTTGSGS SK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_19695A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001148562.1	8e-89	amelogenin precursor like protein
Refseq	XP_008676027.1	8e-89	amelogenin precursor like protein isoform X1
Refseq	XP_008676033.1	8e-89	amelogenin precursor like protein isoform X1
Refseq	XP_008676036.1	8e-89	amelogenin precursor like protein isoform X1
Swissprot	Q69V10	7e-69	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	B6T4L8	2e-87	B6T4L8_MAIZE; Amelogenin like protein
TrEMBL	B8A2P8	2e-87	B8A2P8_MAIZE; BHLH transcription factor
STRING	GRMZM2G350312_P02	3e-88	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	4e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_19695A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]