PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_19732A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LSD

Protein Properties

Length: 63aa MW: 6734.84 Da PI: 9.5402

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_19732A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35	2.4e-11	7	30	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg C+ +Ls P GA+sVRC+lC++ Oropetium_20150105_19732A 7 CGRCGEYLSVPSGARSVRCSLCHA 30 **********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.6E-8	6	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.7E-10	7	30	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MAPRTMCGRC GEYLSVPSGA RSVRCSLCHA ATRVERRPHH NGLHPSAVGF IRGLIGSILL 60 DY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_19732A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152418.1	6e-17	uncharacterized protein LOC100286058
TrEMBL	A0A0A9G170	6e-17	A0A0A9G170_ARUDO; Uncharacterized protein
STRING	GRMZM2G120069_P01	2e-16	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP394	2	2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_19732A