PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19790A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 243aa    MW: 27692.6 Da    PI: 7.3477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19790AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.2e-14145191354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h + Er+RR+++N+ f  L+++lP+      +K++Ka+iL +++ Y+k+L
  Oropetium_20150105_19790A 145 KNHVISERKRREKLNDMFMVLKSMLPTI-----RKMDKASILAETIAYLKDL 191
                                6899***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.03E-14141196No hitNo description
PROSITE profilePS5088816.971142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-18142210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11145191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-17145203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLDDLDQDPQ DTVMAEGHDI GEVDCRFRNK LEQIIKEFND LCNNGPWEEL DMQPLQHSRW  60
IMDDCSSLVE TPLASKDDAT LSTTGNCSQM TSFITWTRFQ SDQRAVPVIG EPQKLLKKVV  120
AGRPRTTIDN DGAITTRSTQ ESRMKNHVIS ERKRREKLND MFMVLKSMLP TIRKMDKASI  180
LAETIAYLKD LKLKVEELES RREPIITSLN EQSERCQDSQ ITGNGKRVPA RAKRKKGLQA  240
QQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13146211873Transcription factor MYC2
5gnj_B3e-13146211873Transcription factor MYC2
5gnj_E3e-13146211873Transcription factor MYC2
5gnj_F3e-13146211873Transcription factor MYC2
5gnj_G3e-13146211873Transcription factor MYC2
5gnj_I3e-13146211873Transcription factor MYC2
5gnj_M3e-13146211873Transcription factor MYC2
5gnj_N3e-13146211873Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERKRRE
2151156RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19790A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP130279e-36ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A1E5W2E81e-55A0A1E5W2E8_9POAL; Anthocyanin regulatory R-S protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.19e-15bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]