PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19945A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 166aa    MW: 18606.4 Da    PI: 10.3957
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19945AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like742.1e-23103152151
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                k rl Wt +LH++F+ a+++L G+ekA+Pk+ile+m+vk Lt+e+v+SHLQ
  Oropetium_20150105_19945A 103 KSRLTWTLQLHRQFMTAINSL-GPEKAVPKKILEVMNVKHLTREQVASHLQ 152
                                68*******************.***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.3E-10152No hitNo description
PROSITE profilePS5011014.647139IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.98E-8176IPR011006CheY-like superfamily
SuperFamilySSF466892.15E-15101158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-22102152IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-21103152IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSSNGDTGTV MKYITNGASD FLIKPVRIEE LKNIWQHVFR KKIGEEQSKN SADQHGIDQP  60
FYPAYVAPSP CPVRTLGIAQ AMALESEIRE TNGTVTDIRD LRKSRLTWTL QLHRQFMTAI  120
NSLGPEKAVP KKILEVMNVK HLTREQVASH LQASPKKIKS NIAQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15102152454ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19945A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679340.14e-70two-component response regulator EHD1
SwissprotQ7Y0W36e-56EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A368SJM82e-68A0A368SJM8_SETIT; Uncharacterized protein
TrEMBLK4AM579e-69K4AM57_SETIT; Uncharacterized protein
STRINGSi039992m2e-69(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-34response regulator 2