PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_20054A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB_related

Protein Properties

Length: 263aa MW: 28776.8 Da PI: 9.7568

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20054A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.3e-15	102	146	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky Oropetium_20150105_20054A 102 PWTEDEHRKFLDGLRQLGKGDWRGISKNFVTTRTATQVASHAQKY 146 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.785	95	151	IPR017930	Myb domain
SuperFamily	SSF46689	1.0E-17	96	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-18	98	150	IPR006447	Myb domain, plants
SMART	SM00717	3.7E-10	99	149	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-11	100	145	IPR009057	Homeodomain-like
Pfam	PF00249	5.0E-12	102	146	IPR001005	SANT/Myb domain
CDD	cd00167	7.00E-10	102	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MERXXXXXXX XXXXTAAPVM SFRLFGMDLL VVAGEFVDEE EGDGLPMEMK KSFSTPNLNS 60 LNGILQPGEV VGKGYASDDG DLASPQQKRR RRKAQERKKG IPWTEDEHRK FLDGLRQLGK 120 GDWRGISKNF VTTRTATQVA SHAQKYFLRQ TNPGKKKRRA SLFDVGIADS NNNDHVPSPQ 180 SIATKPAPAE EIIHTDRGDV PVSELTSFFK RSKGHGESSF ASMASVLETA SSISSLELTM 240 AINSLDLSIA PPRGGAEAIR VL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	92	KRRRRK
2	87	98	KRRRRKAQERKK
3	88	98	RRRRKAQERKK
4	154	158	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20054A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251610	1e-108	AK251610.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129a20, mRNA sequence.
GenBank	AK362457	1e-108	AK362457.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2005J10.
GenBank	AK370274	1e-108	AK370274.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108A12.
GenBank	AK373165	1e-108	AK373165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022M03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983632.1	1e-104	transcription factor MYBS2
Swissprot	B8BI93	2e-75	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	2e-75	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A0A9KKT0	1e-122	A0A0A9KKT0_ARUDO; Uncharacterized protein
STRING	Si036966m	1e-103	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-33	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20054A

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]