PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20218A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 150aa    MW: 16832.9 Da    PI: 6.9496
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20218AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1897149254
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                rk+ ++tkeq   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+
  Oropetium_20150105_20218A  97 RKKLRLTKEQSAMLEERFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRAR 149
                                78889**********************************************98 PP
2HD-ZIP_I/II80.72.3e-2697149153
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 
                                +kk+rl+keq+++LEe F+e+++L+p++K++la++L+l+prqv+vWFqnrRAR
  Oropetium_20150105_20218A  97 RKKLRLTKEQSAMLEERFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRAR 149
                                69**************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.34E-1883149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-1887149IPR009057Homeodomain-like
PROSITE profilePS5007117.32993149IPR001356Homeobox domain
SMARTSM003896.2E-995149IPR001356Homeobox domain
PfamPF000463.9E-1697149IPR001356Homeobox domain
CDDcd000864.91E-1597149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEQEEVGLAL GLSLGSGHHH QLKEEEVQPS PPSRRLEPSL CLSLPADDGT LQKQSLQARP  60
AVKRELPVED DEGATDRALY SVASWAADED EGCNNSRKKL RLTKEQSAML EERFKEHSTL  120
NPKQKAALAK QLNLRPRQVE VWFQNRRAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195101SRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20218A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.12e-64homeobox-leucine zipper protein HOX15
SwissprotA2Z4C41e-37HOX15_ORYSI; Homeobox-leucine zipper protein HOX15
SwissprotQ7G7371e-37HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLK4AE823e-63K4AE82_SETIT; Uncharacterized protein
STRINGSi037189m6e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-29homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]