PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_20246A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 390aa MW: 41683.5 Da PI: 6.051

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20246A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.00058	353	369	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 + +++L +Av+YIk+Lq Oropetium_20150105_20246A 353 NTSDMLDLAVDYIKDLQ 369 7899************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.4E-5	287	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-5	348	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STLLGEFCED FLPTGPRAGS PDAGTDNVFS 60 RFLADNQIRD KPPTPAPATA HFTNEAAMAS XXXXXXXXXX MYHSQQQQQQ MAAVEPGLYR 120 TVSNGMEAAA SAAGTGAGVS NLIRQSSSPA GFLNHLNMDN GYTSMLRAGM GVGFRNGGSA 180 AAANDSPVGG RLKGQLSFSS RQGSLMSQIS EMESEELGGS SPEAAGGGKG FIPGYPMGSG 240 WEDTSSLVMT DTMPGMKRAR DSSEPGQNGL AHQFSLSKTS SEMAAIEKFL QFQDAVPCKI 300 RAKRGCATHP RSIAERVRQT SNLTPCLAFE FLEPFFFAAQ LIRNWSMCLL QTNTSDMLDL 360 AVDYIKDLQK QVKVGIKELL CPVTEVEGY*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STLLGEFCED FLPTGPRAGS PDAGTDNVFS  60
RFLADNQIRD KPPTPAPATA HFTNEAAMAS XXXXXXXXXX MYHSQQQQQQ MAAVEPGLYR  120
TVSNGMEAAA SAAGTGAGVS NLIRQSSSPA GFLNHLNMDN GYTSMLRAGM GVGFRNGGSA  180
AAANDSPVGG RLKGQLSFSS RQGSLMSQIS EMESEELGGS SPEAAGGGKG FIPGYPMGSG  240
WEDTSSLVMT DTMPGMKRAR DSSEPGQNGL AHQFSLSKTS SEMAAIEKFL QFQDAVPCKI  300
RAKRGCATHP RSIAERVRQT SNLTPCLAFE FLEPFFFAAQ LIRNWSMCLL QTNTSDMLDL  360
AVDYIKDLQK QVKVGIKELL CPVTEVEGY*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20246A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804212.1	1e-175	transcription factor bHLH130-like
Refseq	XP_025804213.1	1e-175	transcription factor bHLH130-like
TrEMBL	A0A2S3H345	1e-174	A0A2S3H345_9POAL; Uncharacterized protein
STRING	Pavir.J25484.1.p	1e-174	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20246A