PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_20303A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NF-YC

Protein Properties

Length: 205aa MW: 21783.8 Da PI: 5.2496

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20303A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	169.6	3.7e-53	66	169	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 ql++fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaa Oropetium_20150105_20303A 66 QLQAFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAA 149 89****99999******************************************************************* PP NF-YC 82 avtrtdifdflvdivprdel 101 av+rt++fdflvdivprde Oropetium_20150105_20303A 150 AVARTEVFDFLVDIVPRDEA 169 ****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.49E-30	66	160	IPR009072	Histone-fold
Pfam	PF00808	2.1E-21	88	151	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-36	89	166	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEPNSSTPPP PPPVMGAPVA YPPAAAYPAP GAVAYPPAGA YPGPGAVAYP PAAGQPQQQG 60 AATQHQLQAF WAEQYREIEA TTDFKNHNLP LARIKKIMKA DEDVRMIAAE APVVFARACE 120 MFILELTHRG WAHAEENKRR TLQKSDIAAA VARTEVFDFL VDIVPRDEAK DAEAAAAAVG 180 AGMPHPAAGM PATDPMAYYY VQPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-57	74	166	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	144	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20303A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU974115	1e-148	EU974115.1 Zea mays clone 440194 nuclear transcription factor Y subunit C-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445949.1	9e-88	nuclear transcription factor Y subunit C-6
Swissprot	Q9XE33	2e-79	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	C5YJA9	2e-86	C5YJA9_SORBI; Uncharacterized protein
STRING	Sb07g028600.1	3e-87	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	7e-60	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20303A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]