PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20418A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 242aa    MW: 26267.8 Da    PI: 8.4894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20418AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08158198954
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Oropetium_20150105_20418A 158 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 198
                                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12154208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6158198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-6172203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEFDMLMNST PEAQLELMNA MLQLEQLTAF PDHGGAMMVP STPPSPCVPA PHHHFTSSPV  60
VTHMPAAGTN GRAAVYRDDQ YSQPQVVTAP PSSGSNRSEY TAAAQAPGGR DDVVASSAMR  120
EMIFRVAALQ PVNIEPEMVR PPKRRNVRIS TDPQSVAARM RRERISERIR ILQRLVPGGT  180
KMDTASMLDE AIHYVKFLKT QVQSLERAAA SSGRRPAVTP PDDNDGGAAV TYHAGRLNGQ  240
W*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RPPKRR
2158163RMRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20418A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-124KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683432.11e-96transcription factor HEC1
TrEMBLA0A0A8YXS61e-101A0A0A8YXS6_ARUDO; Uncharacterized protein
TrEMBLA0A1E5W7V91e-100A0A1E5W7V9_9POAL; Transcription factor HEC1
STRINGSi015349m5e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-39bHLH family protein