PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20580A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 252aa    MW: 27209.6 Da    PI: 6.8936
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20580AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.43.6e-12200237136
                       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                                C nC++++  Tp++Rrgp+g +t CnaC l+++k++++
  Oropetium_20150105_20580A 200 CDNCRASSevTPMMRRGPNGCRTFCNACELMWAKTRKM 237
                                9*********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.26168103IPR010399Tify domain
PROSITE profilePS510178.651129172IPR010402CCT domain
PfamPF062033.9E-11129172IPR010402CCT domain
SMARTSM004011.2E-5194247IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-8195241No hitNo description
Gene3DG3DSA:3.30.50.108.6E-12199240IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.93E-9199241No hitNo description
PfamPF003201.4E-9200237IPR000679Zinc finger, GATA-type
PROSITE patternPS003440200227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQQPPAPPSS SFSAGAGGGE AEADPFDDYD IVIPPDFLME LDHNDGGAAA LEEDARMGGG  60
GSCNGGGCAE DDDRLSLAYK GFSYVFDSVP PQKVVTILAL LNGLDIAPQS TRRPQLTHLP  120
IVVPQDFDRT AAVSRYREKR KTTLKFDVKA DYSIRREIAS RIARRRGKFV STDKKPDEPA  180
AAASAHHNPQ AEATELALFC DNCRASSEVT PMMRRGPNGC RTFCNACELM WAKTRKMRDL  240
TGPPRGGYGG R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20580A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828797.12e-57GATA transcription factor 20-like
TrEMBLA0A3L6Q3U92e-72A0A3L6Q3U9_PANMI; GATA transcription factor 28-like
STRINGSi027518m4e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-26ZIM-LIKE 2