PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_20691A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 245aa MW: 25732.2 Da PI: 9.3668

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20691A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	64.6	3e-20	1	51	77	128
NAM 77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 at++gyWkatgkdk++++ +++l g kktLvfy+grapkgek+ Wvmheyr+ Oropetium_20150105_20691A 1 ATQAGYWKATGKDKDIFR-GKALLGSKKTLVFYTGRAPKGEKSGWVMHEYRV 51 5899************.99***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.877	1	79	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-25	2	79	IPR003441	NAC domain
Pfam	PF02365	1.2E-9	2	51	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
ATQAGYWKAT GKDKDIFRGK ALLGSKKTLV FYTGRAPKGE KSGWVMHEYR VLGKLSGVSK 60 ASSSSSSKNE WVLCRVFKKS LAGLVVPPPP PAVAAAPKKG AAVEMARMDD MVLAHLPPLM 120 DMSTVNSAAA HVTCFSNALE GQFFNQQTMP QPAAAGSGTD HLSLAASSPF LASSFAQYGQ 180 QGVSLVQLLE GNGYVGEQQV PPPALPSNKQ GERGERLSAS QDTGLTSDVN PEICSSSGQQ 240 LWGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-17	4	79	95	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-17	4	79	95	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-17	4	79	95	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-17	4	79	95	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-17	4	79	98	168	NAC domain-containing protein 19
3swm_B	2e-17	4	79	98	168	NAC domain-containing protein 19
3swm_C	2e-17	4	79	98	168	NAC domain-containing protein 19
3swm_D	2e-17	4	79	98	168	NAC domain-containing protein 19
3swp_A	2e-17	4	79	98	168	NAC domain-containing protein 19
3swp_B	2e-17	4	79	98	168	NAC domain-containing protein 19
3swp_C	2e-17	4	79	98	168	NAC domain-containing protein 19
3swp_D	2e-17	4	79	98	168	NAC domain-containing protein 19
4dul_A	2e-17	4	79	95	165	NAC domain-containing protein 19
4dul_B	2e-17	4	79	95	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20691A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968233	9e-49	EU968233.1 Zea mays clone 317195 NAC domain protein NAC5 mRNA, complete cds.
GenBank	FP093111	9e-49	FP093111.1 Phyllostachys edulis cDNA clone: bphyem126o09, full insert sequence.
GenBank	FP097753	9e-49	FP097753.1 Phyllostachys edulis cDNA clone: bphyem208n21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826317.1	7e-95	NAC domain-containing protein 92-like
Refseq	XP_025826319.1	7e-95	NAC domain-containing protein 92-like
Refseq	XP_025826320.1	7e-95	NAC domain-containing protein 92-like
Refseq	XP_025826321.1	7e-95	NAC domain-containing protein 92-like
TrEMBL	A0A1E5VC39	8e-96	A0A1E5VC39_9POAL; NAC domain-containing protein 79 (Fragment)
STRING	Si010553m	2e-91	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	1e-32	NAC domain containing protein 80

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20691A