PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20785A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 396aa    MW: 42557.1 Da    PI: 6.1459
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20785AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.51.7e-1373154286
                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +++   +       ++++
  Oropetium_20150105_20785A  73 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVAEAVsSRDGYSKapkSDVQCKNRIDTLKKKYKVERAKPVS-------SWQF 149
                                *************************************87788876222667**************99887775.......5999 PP

                   trihelix  82 fdqle 86 
                                fd+l+
  Oropetium_20150105_20785A 150 FDRLD 154
                                99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.7E-2371155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEDDDDVSAE ASPSPASSPI ASALPMADPV TVASAPPGSA FALALPIQRT AASLYVNAAG  60
GGGGSGGGRE DAWSEGATSA LIDAWGERFV ALGRGSLRHP QWQEVAEAVS SRDGYSKAPK  120
SDVQCKNRID TLKKKYKVER AKPVSSWQFF DRLDTLLAPT YGQKPTGVSG GHIPNGRSNP  180
VPAALRXXXX XXXXXXXXXX XXXXREPSLE PSASSESSDG FPPPALPVTN GKRIRTDEDC  240
GDGGTDRAPG LRELGQAIRR LGEAYERVET ARLEQAAEME RRRMDFAREL ESQRVQFFLN  300
TQMELMQSKN HSSPAGATVP SSTNTVGGGS WRMSTAADAG GSSNHHSRYR VSHGDRHRHA  360
PRSHYRYHDN NHAANAAANK GEQTDEEDDE GEESQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20785A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975744.11e-163trihelix transcription factor ASIL2
SwissprotQ9LJG82e-41ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A3L6PYH41e-162A0A3L6PYH4_PANMI; Trihelix transcription factor ASIL2-like
STRINGSi010246m1e-163(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.13e-44sequence-specific DNA binding transcription factors