PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20867A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ZF-HD
Protein Properties Length: 261aa    MW: 27502.1 Da    PI: 10.0731
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20867AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.72.7e-282068558
                ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                               +YkeC++NhAa++Gg+a+DGCgEfmp+     ++++lkCaACgCHR+FHRr  +
  Oropetium_20150105_20867A 20 KYKECMRNHAAAMGGQAFDGCGEFMPD-----SPDSLKCAACGCHRSFHRRAAV 68
                               7*************************9.....799****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-232066IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-202065IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-252066IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.3992166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.21E-17121183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-27125183IPR009057Homeodomain-like
TIGRFAMsTIGR015658.1E-27126182IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEHLSLVPYE GGGGGGGGGK YKECMRNHAA AMGGQAFDGC GEFMPDSPDS LKCAACGCHR  60
SFHRRAAVAG SGGAPVFFRP PPPPAHHHHH VAALQAFLPS APAPPPPPPP HLALPYHALP  120
AAPWNKRFRT KFTPEQKERM REFAEKQGWR INRNDDGALD RFCHEIGVRR QVLKVWMHNH  180
KNQSPHAQKN HHHHLATSSP AAPPGGATTA AGVTTNPAAI GTGTGGAIPG GMGMACSATA  240
ARPKGANSVL SRSLISYSNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-261261871879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20867A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270252e-71KJ727025.1 Zea mays clone pUT4006 ZF-HD transcription factor (ZHD15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975654.12e-79zinc-finger homeodomain protein 8-like
SwissprotQ9M9S04e-46ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A368RTW76e-78A0A368RTW7_SETIT; Uncharacterized protein
STRINGOMERI04G10740.12e-71(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-41homeobox protein 22