PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21067A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 116aa MW: 13432.5 Da PI: 8.8393

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21067A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	106.2	4.6e-33	1	99	267	366
GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 +f+s+++ lpr+++ r++ E+++++r+ivn++acegaer+erhe ++kW++r+++aGF+p+pl++ +++++++llr ++s yr Oropetium_20150105_21067A 1 MFESIDVALPRDDKRRMSTEQHCVARDIVNIIACEGAERVERHELFGKWKARFSMAGFRPYPLNSVVNNTINTLLRSYNSC-YR 83 7****************************************************************************55. PP GRAS 351 veeesgslvlgWkdrp 366 +ee++g l+lgWk+r+ Oropetium_20150105_21067A 84 LEERDGVLYLGWKNRE 99 **************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.5E-30	1	99	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	18.722	1	88	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MFESIDVALP RDDKRRMSTE QHCVARDIVN IIACEGAERV ERHELFGKWK ARFSMAGFRP 60 YPLNSVVNNT INTLLRSYNS CYRLEERDGV LYLGWKNREF GLLKAGFALY RIDVI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21067A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087542	7e-88	BT087542.1 Zea mays full-length cDNA clone ZM_BFb0105H01 mRNA, complete cds.
GenBank	HQ858766	7e-88	HQ858766.1 Zea mays clone UT1682 GRAS transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793720.1	4e-61	scarecrow-like protein 21
Refseq	XP_025793721.1	4e-61	scarecrow-like protein 21
Refseq	XP_025793722.1	4e-61	scarecrow-like protein 21
Refseq	XP_025793723.1	4e-61	scarecrow-like protein 21
Swissprot	Q9LDL7	3e-48	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A0A9N408	3e-62	A0A0A9N408_ARUDO; SCL21
TrEMBL	A0A2T7C735	3e-60	A0A2T7C735_9POAL; Uncharacterized protein
STRING	Pavir.Ia02739.1.p	4e-61	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP51499	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-50	GRAS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21067A

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]