PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21144A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 882aa    MW: 96118.6 Da    PI: 7.7274
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21144AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.8e-08108129426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                ++C++f++ G C+yG+rC+F H+
  Oropetium_20150105_21144A 108 RPCKYFLA-GDCSYGERCRFPHS 129
                                79******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5138210.9391330IPR004331SPX domain
PROSITE profilePS5010310.8222854IPR000571Zinc finger, CCCH-type
SMARTSM003560.12953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638104131IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4104130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5107129IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5108129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4108130IPR000571Zinc finger, CCCH-type
SuperFamilySSF509786.23E-15135257IPR017986WD40-repeat-containing domain
SMARTSM003202.8E-6135174IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.105.2E-15137263IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004001.1E-5140174IPR001680WD40 repeat
PROSITE profilePS5008214.519142183IPR001680WD40 repeat
PROSITE profilePS5029413.316142183IPR017986WD40-repeat-containing domain
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
CDDcd144792.78E-49243326No hitNo description
PfamPF031057.7E-7294329IPR004331SPX domain
Gene3DG3DSA:1.20.1250.201.1E-15434620No hitNo description
SuperFamilySSF1034731.22E-27434626IPR020846Major facilitator superfamily domain
PfamPF076902.8E-22439814IPR011701Major facilitator superfamily
CDDcd061743.66E-14441877IPR020846Major facilitator superfamily domain
SuperFamilySSF1034731.22E-27673877IPR020846Major facilitator superfamily domain
Gene3DG3DSA:1.20.1250.206.5E-4691876No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MDIEADGRFG NKRVHNRLGP GSGGPPSSTN GKVCNFWRQG RCNRFPCPFL HSELPEASAP  60
TKRSTGPGGN VWRNPSVGGR GGGVGGHNRW GKGPGGGSGG ATQKPPDRPC KYFLAGDCSY  120
GERCRFPHSY HISDSITMLA PLKGHEKVIT GIAMPTGSDK LYTGSKDGTV RIWDCQTGQC  180
ASVINLGREV GCMIIEGPWL FVGIPDAVKV WNMQTAAEMN LTGPAGQVYA LAVANELLFA  240
ATQIEKIVLF LLQQQGHLAR RIENLGEQRA ALMEQSDAAQ ICQLREAYRD VGCDLVKLLR  300
FVDMNATGIR KILKKFDKRF GYKFTDYYVS TRANHPYSLL QQIIKQVGVV AVVGALSRNL  360
ASLQDHRGSF CSIYDNPSII LKDPVIEQIN HSVQKLTHST NFLQFLGQHA LIVPEDLHGS  420
SDLVDDRSYH FMSLLLNLLN TFLYMVNTYI IVPTADDYSV SLGAAATVCG VIIGSMAVAQ  480
IFSSVYFSAW SNRSYFRPLV FSSIMLFIGN LLYALAYDLN SLTVLILGRL LCGLGSARAV  540
NRRYISDCVP LKIRLQASAG FVSASALGMA CGPGLAGLLQ TKWKIYGLTF NQNTLPGWVM  600
SLAWLANLFW LWISFEEPGH IAGEKSVNTL SSESGHRVSG NLEDGLGQPL LVDEKEGQDQ  660
NGEDNDDNDE EPEESHKPAT SIVDAYRLLT PSVKVQLLIY FMLKFAMEIL LSESSVVTTF  720
YFKWTTSTVA MFLAVLGLTV LPVNVIVGSY VTNLFQDRQI LVASEIMVLI GIVMSFCFTP  780
HYSVPQYVSS ALITFVFAEV LEGVNLSLLS RVMSSRLSRG TYNGGLLSTE AGTLARVAAD  840
MTITAAGYLG QSRLLNATLL PSLAICVASL VATFCTYNSL Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21144A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623009.10.0SPX domain-containing membrane protein Os02g45520 isoform X2
SwissprotA2X8A70.0SPXM1_ORYSI; SPX domain-containing membrane protein OsI_08463
SwissprotQ6EPQ30.0SPXM1_ORYSJ; SPX domain-containing membrane protein Os02g45520
TrEMBLA0A0D9YWE90.0A0A0D9YWE9_9ORYZ; Uncharacterized protein
STRINGOGLUM02G28390.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-70zinc finger WD40 repeat protein 1